Convert bim to bed user Kantale

Documentation

Convert from plink's bim to BED

Parameters

<inputs>
</inputs>

Code

def Convert_bim_to_bed_user_Kantale(input_BIM_filename = None, output_BED_filename = None):
	output_BED_file = open(output_BED_filename, "w")
	
	for line in open(input_BIM_filename):
		ls = line.replace("\n", "").split()
		
		chromosome = ls[0]
		rs = ls[1]
		pos = int(ls[3])
		
		output_BED_file.write(str.join(" ", ["chr" + chromosome, str(pos), str(pos+1), rs]) + "\n")
	
	output_BED_file.close()

Unit Tests

def uni1():
	return True

Development Code

def Convert_bim_to_bed_user_Kantale():
	pass

Permissions

Documentation Permissions

Kantale

Code Permissions

Kantale

Unit Tests Permissions

Kantale

Permissions Permissions

Kantale