Convert PEDMAP to TriTyper user Kantale

Documentation

Converts from Tri Type to PED and MAP format. Requires ImputationTool.jar

Parameters

<inputs>
</inputs>

See also

Convert TriTyper to PEDMAP

Code

import os

def Convert_PEDMAP_to_TriTyper_user_Kantale(imputationtool_path=None, pedmap_dir=None, output_dir=None, dummy = False, verbose = True, constants = None):

	if constants:
		constants = Import_WikiPL_article_user_Kantale(constants)()
		imputationtool_path = constants["imputationtool_path"]

	if not Directory_exists_user_Kantale(output_dir):
		Mkdir_user_Kantale(output_dir)

	command = "java -Xmx4g -jar %s --mode pmtt --in %s --out %s" % (imputationtool_path, pedmap_dir, output_dir)
	if verbose: 
		print command
	if not dummy:
			os.system(command)

Unit Tests

def uni1():
	return True

Development Code

def Convert_PEDMAP_to_TriTyper_user_Kantale():
	pass

Permissions

Documentation Permissions

Kantale

Code Permissions

Kantale

Unit Tests Permissions

Kantale

Permissions Permissions

Kantale